Mitochondrial DNA tests
A mitochondrial DNA test (mtDNA test) traces a person's matrilineal or mother-line ancestry using the DNA in his or her mitochondria. mtDNA is passed down by the mother unchanged, to all children. If a perfect match is found to another person's mtDNA test results, one may find a common ancestor in the other relative's (matrilineal) "information table". However, because mtDNA mutations are very rare, the match will not necessarily be within a genealogical time frame.
What gets tested
mtDNA by current conventions is divided into three regions. They are the coding region (00577-16023) and two Hyper-Variable Regions (HVR1 [16024-16569], and HVR2 [00001-00576]). All test results are compared to the mtDNA of a European in haplogroup H2a2a. This early sample is known as the Cambridge Reference Sequence (CRS). A list of single-nucleotide polymorphisms (SNPs) is returned. The relatively few "mutations" or "transitions" that are found are then reported simply as differences from the CRS, such as in the examples just below.
The two most common mtDNA tests are a sequence of HVR1 and a sequence of both HVR1 and HVR2. Some mtDNA tests may only analyze a partial range in these regions. With falling prices the preferred option is now to test both HVR1 and HVR2. Family Tree DNA stopped offering the basic HVR1 test in May 2013.
Many people are now choosing to have the full mitochondrial genome sequenced (scientifically called the mtGenome). This is at times called the mtDNAFullSequence, the Mega Test, or the full mitochondrial sequence (FMS) test.[Footnote 1] An FMS test will report results for all 16,569 bases in the mtGenome and will provide the most detailed subclade assignment. An exact FMS match usually indicates a shared common ancestor within a genealogical timeframe.
Family Tree DNA and GeneBase are the only two companies that currently offer the FMS test. The Genebase FMS test is only available to existing customers as an upgrade. A full sequence test was previously available from the now defunct company Argus Biosciences.
Understanding test results
The most basic of mtDNA tests will sequence hyper-variable Region 1 (HVR1). HVR1 nucleotides are numbered 16024-16569. Some test reports might omit the 16 prefix from HVR1 results, i.e. 519C and not 16519C.
|Differences from CRS||111T,223T,259T,290T,319A,362C||Not Tested|
More extensive tests will also sequence Hyper Variable Region 2 (HVR2). HVR2 nucleotides are numbered 00001-00576.
|Differences from CRS||111T,223T,259T,290T,319A,362C||073G,146C,153G|
The most up-to-date version of the mtDNA tree can be viewed at www.phylotree.org. Phylotree is now on Build 15. Updates are released between two and four times a year. As of January 2013 the different testing companies are using different versions of Phylotree. FTDNA is using Build 14, and the Genographic Project is using Build 13 or 14. FTDNA has indicated that they "have plans to upgrade to the V15 version as part of a coordinated effort with the National Geographic Genographic project" (see FTDNA FAQ 1002). 23andMe uses Phylotree Build 7.
An up-to-date haplogroup assignment can be obtained from James Lick's mtHap utility. This tool is usually updated within 24 hours of the release of each new Phylotree build.
Haplofind is an alternative and less sophisticated tool more suited for batch processing mtDNA full sequence results. It does provide a list of mutations with reported and associated medical implications.
Understanding mtDNA testing
- Understanding mitochondrial DNA testing by Steve Handy. DNA Genealogical Experiences and Tutorials blog, 4 November 2012.
- DNA testing for genealogy - getting started Part Two: mitochondrial DNA by CeCe Moore, Geni.com blog, 25 July 2012
A video of a presentation by ISOGG member Maurice Gleeson showing how mitochondrial DNA testing can be used in family history research:
Bill Hurst, the administrator of the mtDNA haplogroup K, project, describes how he successfully used mtDNA testing to unravel the tale of two sisters:
- Mitosearch - for HVR1 and HVR2 results
- mtDNACommunity - for FMS results only
- GenBank - for FMS results only
- Charles Kerchner's mtDNA test results log
- My FTDNA 2.0 User Guide: mtDNA FTDNA FAQs
- Understanding mtDNA results FTDNA FAQs
- Understanding your mtDNA results FTDNA report for full sequence results
- Your scientific collaboration: mtDNA full sequence results donation FTDNA FAQs
- Your scientific collaboration: mtDNACommunity FTDNA FAQs
- FTDNA's list of mtDNA haplogroup-defining mutations
- Your privacy and showing your mtDNA coding region results by Rebekah Canada, Haplogroup blog, 9 July 2013.
- Mitochondrial DNA testing at a new low price by Debbie Kennett, Cruwys News blog, 10 May 2013 (article includes a discussion of the merits of the different types of mtDNA test)
- The mtDNA Community by Roberta Estes, DNAeXplained, 16 July 2012
- Roderick TH, King M-C, Anderson RC. Mitochondrial DNA: A genetic and genealogical study. NEXUS, October-November issue, New England Historic Genealogical Society, 22 November 1992.[Footnote 2]
- Smolenyak M. The ABCs of mtDNA
- ISOGG chart showing path of mtDNA transmission
- mtDNA tutorial from Genebase
- Mitomap A compendium of polymorphisms and mutations of the human mitochondrial DNA
- Wikipedia article on mitochondrial DNA
- FMS is a historic industry joke because it is a female test and FGS rhymes with PMS (Pre-Menstrual Syndrome).
- The New England Historic Genealogical Society published NEXUS until the Nov-Dec.1999 issue. They replaced it with New England Ancestors which in turn was succeeded by the winter 2010 issue of American Ancestors.
- ISOGG Wiki mtDNA Portal
- Before You Buy
- mtDNA testing comparison chart
- mtDNA haplogroup projects
- MtDNA haplogroup nicknames
- mtDNA tools
- Custom mitochondrial DNA reports