Y-DNA Haplogroup C and its Subclades - 2014

The entire work is identified by the Version Number and date given on the Main Page.   Directions for citing the document are given at the bottom of the Main Page.
Version History     Last revision date for this specific page: 5 October 2014

Because of continuing research, the structure of the Y-DNA Haplogroup Tree changes and ISOGG does its best to keep the tree updated with the latest developments in the field. The viewer may observe other versions of the tree on the Web. Email Alice Fairhurst if the differences need clarification or if you find any broken links on this page.

LINKS:  Main Page   Y-DNA Tree Trunk   SNP Index   Papers/Presentations Cited   Glossary   Listing Criteria
CLADE/SUBCLADE SYMBOLS:  Added  Redefined 
SNP SYMBOLS:  Not on 2013 tree  Confirmed within subclade  Provisional  Private  Investigation 

The criteria for a representative SNP printed in bold for a subclade is: traditional usage, testing one in multiple labs, and/or being found in the area of the chromosome used in recent research studies.

SNPs listed below in italics (colored black or red) are quality variants from next-generation sequencing reports consistently showing as representing that subgroup.

Contact Person for Haplogroup C: Ray H. Banks

Link to Experimental Composite Y-DNA Haplogroup C Tree by Ray Banks.

C   M130/Page51/RPS4Y711, M216, IMS-JST029149, IMS-JST037816-80, P184, P255/P325, P260/P324, Page85, V77, V183, V199, V232
C*   -
C1   F3393/Z1426
• • C1*   -
• • C1a   CTS11043
• • • C1a*   -
• • • C1a1   M8, CTS219, CTS231, CTS483, CTS667, CTS1208, CTS1994, CTS2278, CTS2609, CTS3357, CTS3368/PF693, CTS3370, CTS3487, CTS3825, CTS4198, CTS4318/Z1392, CTS4324, CTS4866, CTS5312/Z1394, CTS5794/Z1396, CTS5942, CTS6670, CTS7285, CTS8419, CTS8781, CTS9122, CTS9291, CTS9351, CTS10312/Z1412, CTS11072/Z1425, CTS11382/Z1428, CTS11581/Z1429, CTS11893/Z1430, IMS-JST037816, M105, M131, P122
• • • • C1a1*   -
• • • • C1a1a   P121
• • • •  C1a1a*   -
• • • •  C1a1a1   CTS6678, CTS10729, CTS11058, Z7054, Z7174, Z7180, Z7190, Z7196, Z7643, Z7650, Z7842, Z7968, Z7972, Z7985, Z7986, Z7988, Z7989, Z7991
• • • •  C1a1a2   Z1356, CTS7128/Z1357, Z4160, Z7156, Z7159, Z7162, Z7228, Z7231, Z7232, Z7234, Z7237, Z7856, Z7869, Z7870, Z7898, Z7899, Z7900, Z7901, Z7902, Z7903, Z7904
• • • C1a2   V20, V71, V86, V182, V184, V219
• • • • C1a2*   -
• • • • C1a2a   V222
• • C1b   F1370
• • • C1b*   -
• • • C1b1   M356
• • • • C1b1*   -
• • • • C1b1a   P92, F930/K105, K43, K45, K59, K61, K69, K78, K83, K88, K90, K94, K99, K108, K129, K134, K141, K146, K147, K156, K161, K162, K181, K184, K185, K186, K187, K188, K205, K245, K246, K249, K252, K260, K261, K267, K280, K293, K310, K317, K319, K320, K323, K327, K331, K358, K377, K396, K398, K401, K402, K414, K415, K417, K426, K427, K435, Z12426, Z12427, Z12428, Z12429, Z12430, Z12431, Z12432, Z12433, Z12434, Z12435, Z12436, Z12437, Z12438, Z12439, Z12440, Z12441, Z12442, Z12443, Z12444, Z12445, Z12446, Z12447, Z12448, Z12449, Z12450, Z12451, Z12452, Z12453, Z12454, Z12455, Z12456, Z12457, Z12458, Z12459, Z12460, Z12461, Z12462, Z12463, Z12464, Z12465, Z12466, Z12467, Z12468, Z12469, Z12470, Z12471, Z12472, Z12473, Z12474, Z12475, Z12476, Z12477, Z12478, Z12479
• • • •  C1b1a*   -
• • • •  C1b1a1   Z5895, K40, K41, K56, K70, K74, K79, K102, K104, K113, K119, K136, K138, K153, K159, K175, K191, K195, K196, K197, K198, K223, K231, K234, K238, K258, K274, K277, K296, K297, K303, K308, K309, K324, K332, K333, K341, K361, K382, K395, K399, K400, K404, K406, K407, K412, K429, K434, Z12482, Z12483, Z12484, Z12485, Z12486, Z12487, Z12488, Z12489, Z12490, Z12491, Z12492, Z12493, Z12494, Z12495, Z12496
• • • •  C1b1a1*   -
• • • •  C1b1a1a   K96, K107, K131, K163, K233, K272, K283, K425, Z12480, Z12481, Z12497, Z12498, Z12499, Z12500, Z12502, Z12503
• • • •  ••  C1b1a1a*   -
• • • •  ••  C1b1a1a1   K42, K44, K60, K68, K77, K86, K101, K117, K118, K135, K140, K143, K209, K227, K235, K236, K244, K276, K300, K316, K338, K362, K418/Z12513, K444, Z12504, Z12505, Z12506, Z12507, Z12508, Z12509, Z12510.1/Z15303.1, Z12511, Z12512, Z12514
• • • •  • • • C1b1a1a1*   -
• • • •  • • • C1b1a1a1a   Z5896, K92, K225, K428, Z12515, Z12516, Z12517, Z12518, Z12519, Z12520
• • • •  • • • • C1b1a1a1a*   -
• • • •  • • • • C1b1a1a1a1   K193, Z12521
• • • •  • • • •  C1b1a1a1a1*   -
• • • •  • • • •  C1b1a1a1a1a   Z12522
• • • •  • • • •  C1b1a1a1a1a*   -
• • • •  • • • •  C1b1a1a1a1a1   K466, K468, Z12527, Z12528
• • • •  • • • •  C1b1a1a1a1a1*   -
• • • •  • • • •  C1b1a1a1a1a1a   K469, K470, Z12530
• • • •  • • • •  • • • C1b1a1a1a1a1a*   -
• • • •  • • • •  • • • C1b1a1a1a1a1a1   Z5898
• • • • C1b1b   Z5900, Z12318, Z12319, Z12320, Z12321, Z12322, Z12323, Z12324, Z12325, Z12326, Z12327, Z12328, Z12329, Z12330, Z12331, Z12332, Z12333, Z12334, Z12335, Z12336, Z12337, Z12338, Z12339, Z12340, Z12341, Z12342, Z12343, Z12344, Z12345, Z12346, Z12347, Z12348, Z12349, Z12350, Z12351, Z12352, Z12353, Z12354, Z12355, Z12356, Z12357, Z12358, Z12359, Z12360, Z12361, Z12362, Z12363, Z12364, Z12365, Z12366, Z12367, Z12368, Z12369, Z12370, Z12371, Z12372, Z12373, Z12374, Z12375, Z12376, 12377, Z12378, Z12379, Z12380, Z12381, Z12382, Z12383, Z12384, Z12385, Z12386, Z12387, Z12388, Z12389, Z12390, Z12391, Z12392, Z12393, Z12394, Z12395, Z12396, Z12397, Z12398, Z12399, Z12400, Z12401, Z12402, Z12403, Z12404, Z12405, Z12406, Z12407, Z12408, Z12409, Z12410, Z12411, Z12412, Z12413, Z12414, Z12415, Z12416, Z12417, Z12418, Z12419, Z12420, Z12421, Z12422, Z12423, Z12424, Z12425
• • • C1b2   M38
• • • • C1b2*   -
• • • • C1b2a   M208
• • • •  C1b2a*   -
• • • •  C1b2a1   P33_1, P33_2, P33_3
• • • •  C1b2a2   P54
• • C1c   M347, P309
• • • C1c*   -
• • • C1c1   M210
C2   M217, P44, Z1453
• • C2*   -
• • C2a   M93
• • C2b   L1373, F1396, F1699, F1788, F1906, F2386, F2661, F3348, F3447, F3738, F3752, F3769, F3776, F3783, F3787, F3805, F3831, F3847, F3851, F3904, F3914, F3923, F3927, F3929, F3950, F3951, F3954, F3972, F3977, F3980, F3981, F3982, F3986, F4012, F4032
• • • C2b*   --
• • • C2b1   F3918, F4015
• • • • C2b1*   --
• • • • C2b1a   P39
• • • • C2b1b   F1756, F3985, F3613, F3647/M1923, F3825, F3844, F3868, F3896, F3937, F3955, F3971, F4006, F4017
• • • •  C2b1b*   -
• • • •  C2b1b1   F3830
• • • C2b2   M48
• • • • C2b2*   --
• • • • C2b2a   M77, M86
• • • C2b3   F1918, F4002, F966, F2007, F2914, F3747, F3770, F3779, F3791, F3795, F3810, F3827, F3834, F3897, F3919, F3932, F3939, F3945, F3991, F4023, F4031, F4141
• • C2c   P53.1
• • C2d   P62
• • C2e   F2613/Z1338
• • • C2e*   -
• • • C2e1   Z1300, CTS1019, CTS4021/Z1301, CTS4590, F2982, F3895, K37, Z3874, Z4040, Z8441, Z8446, Z12153, Z12252, Z12257, Z12258
• • • • C2e1*   -
• • • • C2e1a   M407
• • • • C2e1b   Z8440, F3880, Z3994, Z12209
• • • •  C2e1b*   -
• • • •  C2e1b1   F1319, F1673, F3777, F3797.2/Z2201.2, F3799, Z12177, Z12179, Z12202, Z12205, Z12253, Z12254, Z12255, Z12256
• • • •  C2e1b1*   -
• • • •  C2e1b1a   F3735, F3748, F3750/M4236, F3806
• • • •  C2e1b2   CTS3385
• • • C2e2   F845, CTS3958, CTS5126, CTS6704/M8145, CTS10923, CTS12931, K500, K502, K503, K504, K505, K506, K507, K508, K509, K510, K546, K547, K548, K549, K550, K551, K553, K554, Z12259, Z12260, Z12261, Z12262, Z12263, Z12264, Z12265, Z12266, Z12267, Z12268, Z12269, Z12270, Z12271, Z12272, Z12273, Z12274, Z12275
• • • • C2e2*   -
• • • • C2e2a   K516, K511, K512, K513, K514, K515, K517, K518, K519, K520, K521, K522/K543, K523, K524, K525, K526, K527, K528, K529, K530, K531, K532, K533, K534, K536, K537, K538, K539, K540, K542, K544, K545, Z12276, Z12277, Z12278, Z12279, Z12280, Z12281, Z12282, Z12283, Z12284, Z12285, Z12286, Z12287, Z12288, Z12289, Z12290, Z12291, Z12292, Z12293, Z12294, Z12295, Z12296, Z12297, Z12298, Z12299, Z12300, Z12301, Z12302, Z12303, Z12304, Z12305, Z12306, Z12307, Z12308, Z12309, Z12310, Z12311, Z12312, Z12313, Z12314, Z12315, Z12316, Z12317
• • C2f   IMS-JST002613-27

Private SNPs - After having been investigated, these SNPs have not met the population distribution criteria for placement on the tree. Either too few confirmed positive testers have been found OR multiple confirmed testers were confined to either a single surname or to a small group of related males.

SNPs under Investigation - Additional testing is needed to confirm adequate positive samples and/or correct placement on the tree.

NOTES:

Y-DNA haplogroup C is thought to have arisen shortly after modern humans left Africa. Descendants spread mostly through southern and eastern Asia, but branches developed also in the Americas, islands south of Malaysia, Australia, central Asia and Europe.

C* is found on the Indian subcontinent, Sri Lanka and in parts of SE Asia. The uncommon C1-M8 lineage appears to be restricted to Japan. C-M38 is found predominantly in New Guinea, Melanesia, and Polynesia. The C-M217 lineage is most common of them all and is believed to have originated in southeast or central Asia, spreading from there into northern Asia and the Americas. C-M217 is also found in low concentrations in eastern and central Europe, where it may represent evidence of the westward expansion of the Huns in the early Middle Ages and later the Mongols. Subhaplogroup P39 seems to be found only in the Americas. C-Z1338 combines both eastern and central Asian groups. C-M347 is found exclusively among aboriginal Australians and is dominant in that population. C-M356 has a significant presence in southern Asia. C-V20 is most common in Europe.

Using variation in STR markers, Zhong et al. in 2010 estimated the divergence times of some Hg C subgroups as they then existed as follows (thousands of years):
C-M8       41.9 ± 16.6
C-M356   33.3 ± 19.1
C-M217   32.6 ± 14.1
C-P39      14.5 ± 5.1
C-M48       9.3 ± 3.3
C-P53.1   14.4 ± 5.1
C-M407   12.0 ± 4.2

References:

Behar et al, Genome-Wide Structure of the Jewish People. Nature, 446:238-42, 2010.
Bortolini et al, Y-Chromosome Evidence for Differing Ancient Demographic Histories in the Americas. American Journal of Human Genetics, 73:524-539, (2003).
Bosch et al, Paternal and Maternal Lineages in the Balkans Show a Homogeneous Landscape over Linguistis Barriers except for the Isolated Aromuns. Annals of Human Genetics, 70:459-87, (2006).
Capelli et al, Population Structure in the Mediterranean Basin: A Y Chromosome Perspective. (pdf) Annals of Human Genetics, 2005.
Cadenas et al, Y-chromosome Diversity Characterizes the Gulf of Oman. European Journal of Human Genetics, 16:374-386, 2008.
Chen et al, Y Chromosome Genotyping and Genetic Structure of Zhuang Populations. (abstract) Acta Genetica Sinica, 33(12), 1060-72, 2006.
Cinnioglu et al, Excavating Y-chromosome Haplotype Strata in Anatolia. (pdf) Human Genetics. 114:127-148, 2004.
Cristofaro et al, Afghan Hindu Kush: Where Eurasian Sub-Continent Gene Flows Converge. PLoS ONE 8(10): e76748. doi:10.1371/journal.pone.0076748, 2013.
Cruciani et al, A Revised Root for the Human Y Chromosomal Phylogenetic Tree--The Origin of Patrilineal Diversity in Africa. The American Journal of Human Genetics, doi:10.1016/j.ajhg.2011.05.002, 2011.
Delfin et al, The Y Chromosome Landscape of the Philippines: Extensive Heterogeneity and Varying Genetic Affinities of Negrito and Non-Negrito Groups. (abstract) European Journal of Human Genetics, 19:224-30, 2011.
Derenko et al, Contrasting patterns of Y-Chromosome variation in South Siberian populations from Baikal and Altai-Sayan regions, Human Genetics 118: 591-604, 2006.
Dulik et al, Mitochondrial DNA and Y Chromosome Variation Provides Evidence for a Recent Common Ancestry between Native Americans and Indigenous Altaians. (pdf) The American Journal of Human Genetics, doi: 10.1016/ajhg.2011.12.014, 2012.
Dulik et al, Y-Chromosome Variation in Altaian Kazakhs Reveals a Common Paternal Gene Pool for Kazakhs and the Influence of Mongolian Expansions. (pdf) PLoS ONE, Vol. 6, Issue 3, e17548, 2011.
Eaaswarkhanth et al, Traces of Sub-Saharan and Middle Eastern Lineages in Indian Muslim Populations. European Journal of Human Genetics, 18, 354-363, 2010.
Fornarino et al, Mitochondrial and Y-chromosome Diversity of the Tharus (Nepal): A Reservoir of Genetic Variation. BMC Evol Biol. 2009; 9: 154. Published online 2009 July 2. doi: 10.1186/1471-2148-9-154, 2009.
Gayden et al, The Himalayas as a Directional Barrier to Gene Flow. American Journal of Human Genetics, 80(5):884-894, 2007.
Geppert et al, Hierarchical Y-SNP Assay to Study the Hidden Diversity and Phylogenetic Relationship of Native Populations in South America. Forensic Science International: Genetics, 6 Oct 2010.
Hammer et al, Dual Origins of the Japanese: Common Ground for Hunter-gatherer and Farmer Y Chromosomes. (abstract) Journal of Human Genetics, 51:47-58, 2006.
Hudajashov et al, Revealing the Prehistoric Settlement of Australia by Y chromosome and mtDNA Analysis. PNAS, 104:21, 2007.
Jin et al, Genetic Diversity of Two Haploid Markers in the Udegey Population from Southeastern Siberia. (abstract) American Journal of Physical Anthropology, 142:303-313, 2010.
Jin et al, The Peopling of Korea Revealed by Analyses of Mitochondrial DNA and Y-Chromosomal Markers. PLoS One, vol 4(1):ed4210, 2009.
Karafet et al, Major East-West Division Underlies Y Chromosome Stratification Across Indonesia. Abstract. Molecular Biology and Evolution, doi:10.1093/molbev/msq063. 2010.
Karafet et al, New Binary Polymorphisms Reshape and Increase Resolution of the Human Y-Chromosomal Haplogroup Tree. Abstract. Genome Research, published online April 2, 2008. Supplementary Material.
Kayser et al, Independent Histories of Human Y Chromosomes from Melanesia and Australia. American Journal of Human Genetics, 68:173-190, 2001.
Kayser et al, The Impact of the Austronesian Expansion: Evidence from mtDNa and Y Chromosome Diversity in the Admiralty Islands of Melanesia. Molecular Biology Evolution, 25(7):1362-1374, 2008.
Kayser et al, Melanesian and Asian Origins of Polynesians: mtDNA and Y-Chromosome Gradients across the Pacific. MBE Advance Access published August 21, 2006.
Li et al, Paternal Genetic Affinity between Western Austronesians and Daic Populations BMC Evolutionary Biology, Vo. 15(8), p. 146, 2008.
Malhi et al, Distribution of Y Chromosomes among Native North Americans: A Study of Athapaskan Population History American Journal of Physical Anthropology, 137:412-24, 2008.
Malyarchuk et al, On the Y-chromosome Haplogroup C3c Classification. Abstract. Journal of Human Genetics. Epub ahead of print, 2012 Jul 19.
Malyarchuk et al, Phylogeography of the Y-Chromosome Haplogroup C in Northern Eurasia. (abstract) Annals of Human Genetics, 74:539-46, 2010.
Mohyuddin et al, Detection of Novel Y SNPs Provides Further Insights into Y Chromosomal Variation in Pakistan. Journal of Human Genetics, 2006.
Mona et al, Patterns of Y-chromosome Diversity Intersect with the Trans-New Guinea Hypothesis. Mol Biol Evol. 2007 Sep 10; [Epub ahead of print]
Naitoh S, et al, Assignment of Y-chromosomal SNPs Found in Japanese Population to Y-chromosomal Haplogroup tree. Journal of Human Genetics, 2014 Feb 7. doi: 10.1038/jhg.2012.159, 2013.
Nonaka et al, Y Chromosomal Binary Haplogroups in the Japanese Population and their Relationship to 16 Y-STR Polymorphisms. (abstract) Annals of Human Genetics, 71:480-495, 2007.
Pakendorf et al, Investigating the Effects of Prehistoric Migrations in Siberia: Genetic Variation and the Origins of Yakuts, Human Genetics, Volume 120, Number 3, 334-353, 2006.
Regueiro et al, Iran: Tricontinental Nexus for Y-Chromosome Driven Migration. (abstract) Human Heredity, Vol. 61, No 3, 132-143, 2006.
Scheinfeldt et al, Unexpected NRY Chromosome Variation in Northern Island Melanesia. Society for Molecular Biology, 2006.
Scozzari et al, Molecular Dissection of the Basal Clades in the Human Y Chromosome Phylogenetic Tree, PLoS ONE, Vol. 7, Issue 11, e4917, 2012.
Sengupta et al, Polarity and Temporality of High Resolution Y-chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of Central Asian Pastoralists. (pdf) American Journal of Human Genetics, 78:202-221, 2006.
Sharma et al, The Indian Origin of Paternal Haplogroup R1a1 Substantiates the Autochthonous Origin of Brahmins and the Caste SystemOrigin of Paternal Haplogroup R1a1. (abstract) Journal of Human Genetics, 54:47-55, 2009.
Shou et al, Y-Chromosome Distributions among Populations in Northwest China Identify Significant Contribution from Central Asian Pastoralists and Lesser Influence of Western Eurasians. (abstract) Journal of Human Genetics, 55: 314-22, 2010.
Underhill et al, Use of Y Chromosome and Mitochondrial DNA Population Structure in Tracing Human Migrations. (abstract) Annual Review Genetics, 41:539-564, December 1, 2007(a).
Underhill et al, Y Chromosome Sequence Variation and the History of Human Populations. (pdf) Nature Genetics, 26: 358-361, November 2000.
Xue et al, A Spatial Analysis of Genetic Structure of Human Populations in China Reveals Distinct Difference between Maternal and Paternal Lineages. European Journal of Human Genetics, 16:705-17, 2008.
Zhao et al, Presence of Three Different Paternal Lineages among North Indians: A Study of 560 Y Chromosomes. (abstract) Annals of Human Biology, 36(1):46-59, 2009.
Zhong et al, Extended Y-chromosome Investigation Suggests Post-Glacial Migrations of Modern Humans into East Asia via the Northern Route. Molecular Biology, 28(1):717-727, 2011.
Zhong et al, Global Distribution of Y-Chromosome Haplogroup C Reveals the Prehistoric Migration Routes of African Exodus and Early Settlement in East Asia. (abstract) Journal of Human Genetics, 55(7):428-35, 2010.

Additional Resources:
ISOGG Wiki - What you need to know about Genetic Genealogy.
C Haplogroup, Ed Martin, Ray Banks.
Haplogroup C Project, Ray Banks.

Corrections/Additions made since 1 January 2014:

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